Here’s a list of useful bookmarks when learning to code with data, or coding for research. You can either check out links individually, or if you want the whole list imported as a bookmark folder in your internet browser, you can download The bookmark file here by rightclick ‘save link as’.
This was made with the really helpful code of : https://github.com/mustash/bookmarks-html2markdown to do the conversion
| RESOURCE NAME | URL |
|---|---|
| Python Data Science Handbook : Python Data Science Handbook | https://jakevdp.github.io/PythonDataScienceHandbook/ |
| The Hitchhiker’s Guide to Python! — The Hitchhiker’s Guide to Python | https://docs.python-guide.org/ |
| Interactive Spyder and Jupyter Matplotlib plots in separate window : Michael Hirsch, Ph.D. | https://www.scivision.dev/spyder-with-ipython-make-matplotlib-plots-appear-in-own-window/ |
| Data Science from Scratch: First Principles with Python | http://math.ecnu.edu.cn/~lfzhou/seminar/[Joel_Grus]_Data_Science_from_Scratch_First_Princ.pdf |
| Python as a Second Language: Basics | https://swcarpentry.github.io/python-second-language/01-basics/ |
| Episodes - [Talk Python To Me Podcast] | https://talkpython.fm/episodes/all |
| Image processing in Python — scikit-image | http://scikit-image.org/ |
| Non-Programmer’s Tutorial for Python 3 - Wikibooks, open books for an open world | https://en.wikibooks.org/wiki/Non-Programmer%27s_Tutorial_for_Python_3 |
| Introduction — Python for Biologists | https://pythonforbiologists.com/introduction/ |
| Research Software Engineering with Python | https://merely-useful.tech/py-rse/index.html |
| Research Software Engineering with Python | https://merely-useful.tech/py-rse/ |
| Welcome to Python 101! | https://python101.pythonlibrary.org/ |
| RESOURCE NAME | URL |
|---|---|
| How to Install Ubuntu Linux on VirtualBox on Windows 10 [Step by Step Guide] | https://itsfoss.com/install-linux-in-virtualbox/ |
| How To Get Started With The Ubuntu Linux Distro : Gizmodo Australia | https://www.gizmodo.com.au/2017/11/how-to-get-started-with-the-ubuntu-linux-distro/ |
| The Unix Workbench | http://seankross.com/the-unix-workbench/command-line-basics.html#hello-terminal |
| Thinking like a Computer: The Fundamentals of Programming - YouTube | https://www.youtube.com/watch?v=NV5GxkjMs3k |
| The Missing Semester of Your CS Education · the missing semester of your cs education | https://missing.csail.mit.edu/ |
| Incubator Lesson Spotlight: Foundational Computer Skills | https://carpentries.org/blog/2021/06/incubator-lesson-foundational-computer-skills/ |
| Run Docker in WSL (Windows 10/11) without Docker Desktop : by Sung Kim : Geek Culture : Medium | https://medium.com/geekculture/run-docker-in-windows-10-11-wsl-without-docker-desktop-a2a7eb90556d |
| RESOURCE NAME | URL |
|---|---|
| Gnu Parallel - Parallelize Serial Command Line Programs Without Changing Them | https://www.biostars.org/p/63816/ |
| HPC in a day | https://swcarpentry.github.io/hpc-novice/ |
| Nectar training | http://training.nectar.org.au/ |
| HPC Novice- Softcarp | http://swcarpentry.github.io/hpc-novice/ |
| Containers on HPC and Cloud with Singularity | https://pawseysc.github.io/singularity-containers/ |
| Open GPU Data Science : RAPIDS | https://rapids.ai/ |
| Training Material - User Support Documentation - Pawsey Documentation | https://support.pawsey.org.au/documentation/display/US/Training+Material |
| RESOURCE NAME | URL |
|---|---|
| Machine Learning Version Control System | https://dvc.org/ |
| Weka 3 - Data Mining with Open Source Machine Learning Software in Java | http://www.cs.waikato.ac.nz/ml/weka/ |
| RESOURCE NAME | URL |
|---|---|
| The Journal of Open Source Software | http://joss.theoj.org/about |
| Authoring With Markdown – Building Websites With Jekyll and GitHub | https://carpentries-incubator.github.io/jekyll-pages-novice/markdown/index.html |
| RESOURCE NAME | URL |
|---|---|
| 3. Process - CESSDA TRAINING | https://www.cessda.eu/Training/Training-Resources/Library/Data-Management-Expert-Guide/3.-Process |
| Browse by subject : re3data.org | http://www.re3data.org/browse/by-subject/ |
| De-identification - ARDC | https://www.ands.org.au/__data/assets/pdf_file/0003/737211/De-identification.pdf |
| Code Testing — The Turing Way | https://the-turing-way.netlify.app/reproducible-research/testing.html |
| Repeat After Me - by Maki Naro | https://thenib.com/repeat-after-me |
| You Want to See My Data? I Thought We Were Friends! | https://nautil.us/blog/you-want-to-see-my-data-i-thought-we-were-friends |
| Reproducible Research with Stata - using version control, GitHub, and MarkDoc | https://www.stata.com/meeting/switzerland16/slides/haghish-switzerland16.pdf |
| RESOURCE NAME | URL |
|---|---|
| Openscience- open source tools by use | http://openscience.org/links/ |
| Open Knowledge Maps - A visual interface to the world’s scientific knowledge | https://openknowledgemaps.org/ |
| Science | https://github.com/showcases/science |
| Open Knowledge: Projects | https://okfn.org/projects/ |
| The Open Data Handbook | http://opendatahandbook.org/guide/en/ |
| ckan – The open source data portal software | https://ckan.org/ |
| protocols.io - Life Sciences Protocol Repository | https://www.protocols.io/ |
| CC Search | https://search.creativecommons.org/ |
| Labs and Tools - Nectar | https://nectar.org.au/labs-and-tools/ |
| OpenWetWare | https://openwetware.org/wiki/Main_Page |
| About - data.gov.au | https://data.gov.au/about |
| Welcome to the OpenBCI Community · OpenBCI Documentation | https://docs.openbci.com/docs/Welcome.html |
| CVL on Wiener list of software tools : CVL Community | https://characterisation-virtual-laboratory.github.io/CVL_Community/FAQs/ |
| RESOURCE NAME | URL |
|---|---|
| Tabula: Extract Tables from PDFs | http://tabula.technology/ |
| Whiteboard Picture Cleaner - Shell one-liner/script to clean up and beautify photos of whiteboards! | https://gist.github.com/lelandbatey/8677901 |
| OpenRefine/OpenRefine Wiki | https://github.com/OpenRefine/OpenRefine/wiki/Installation-Instructions#linux |
| RESOURCE NAME | URL |
|---|---|
| 5minuteStats | http://stephens999.github.io/fiveMinuteStats/index.html |
| Cross Validated | https://stats.stackexchange.com/ |
| Which Stats Test - SAGE Research Methods | http://methods.sagepub.com/which-stats-test |
| Choosing the Correct Statistical Test in SAS, Stata, SPSS and R | https://stats.idre.ucla.edu/other/mult-pkg/whatstat/ |
| Learning Statistics with R | https://learningstatisticswithr.com/ |
| Statistical Thinking for the 21st Century | https://statsthinking21.org/ |
| 1 Introduction : A Matrix Algebra Companion for Statistical Learning | https://www.gastonsanchez.com/matrix4sl/intro.html |
| PsyTeachR | https://psyteachr.github.io/ |
| RESOURCE NAME | URL |
|---|---|
| Bioinformatics Tutorials : Phil Chapman’s Blog | https://chapmandu2.github.io/post/2017/11/06/bioinformatics-tutorials/ |
| learn BioInfo - ROSALIND | http://rosalind.info/about/ |
| Living in an Ivory Basement | http://ivory.idyll.org/blog/ |
| ToolFinder | https://australianbiocommons.github.io/2_tools.html |
| Galaxy Training | https://training.galaxyproject.org/ |
| RESOURCE NAME | URL |
|---|---|
| ecocloud : | https://ecocloud.org.au/ |
| Free and Open Access to Biodiversity Data : GBIF.org | http://www.gbif.org/ |
| SunPy | http://sunpy.org/ |
| What is Dr Climate? : Dr Climate | https://drclimate.wordpress.com/what-is-dr-climate/ |
| ZoaTrack - Free Animal Tracking Software | http://zoatrack.org/ |
| Education : DataONE | https://www.dataone.org/Education?ct=t(andsUP_06DEC_2016) |
| Macroeco: Ecological pattern analysis in Python — macroeco 1.0 documentation | http://macroeco.org/ |
| Atlas of Living Australia – Open access to Australia’s biodiversity data | https://www.ala.org.au/ |
| TERN - Australia’s Land Ecosystem Observatory : Critical Data | https://www.tern.org.au/ |
| RESOURCE NAME | URL |
|---|---|
| Geospatial data and metadata - ANDS | http://www.ands.org.au/working-with-data/metadata/geospatial-data-and-metadata |
| Getting Started | http://docs.qgis.org/2.18/en/docs/user_manual/introduction/getting_started.html |
| Queensland Globe | https://qldglobe.information.qld.gov.au/ |
| Google Maps and R | https://www.littlemissdata.com/blog/maps |
| AURIN Home - AURIN. Australian Urban Research Infrastructure Network | https://aurin.org.au/ |
| RESOURCE NAME | URL |
|---|---|
| All Those Shapes — Google Arts Culture | https://www.google.com/culturalinstitute/beta/category/place |
| Google Arts Culture | https://www.google.com/culturalinstitute/beta/ |
| Google Expeditions | https://edu.google.com/expeditions/ |
| Humanities Networked Infrastructure - HuNI | https://huni.net.au/#/search |
| Omeka | https://omeka.org/ |
| Word Tree / Fernanda Viegas Martin Wattenberg | http://hint.fm/projects/wordtree/ |
| Text Mining with R | https://www.tidytextmining.com/index.html |
| PLOS Collections: Article collections published by the Public Library of Science | http://collections.plos.org/textmining |
| Introduction to Cultural Analytics Python — Introduction to Cultural Analytics Python | https://melaniewalsh.github.io/Intro-Cultural-Analytics/welcome.html |
| Welcome - GLAM Workbench | https://glam-workbench.net/ |
| RESOURCE NAME | URL |
|---|---|
| Visual Studio Code | https://code.visualstudio.com |
| Code Carabiners: Essential Protection Tools for Safe Programming - O’Reilly Radar | http://radar.oreilly.com/2014/01/code-carabiners-essential-protection-tools-for-safe-programming.html?cmp=tw-prog-na-article-pr_code_carabiners |
| Code for a Living - Stack Overflow Blog | https://stackoverflow.blog/code-for-a-living/ |
| Hard Coding Concepts Explained with Simple Real-life Analogies | https://medium.freecodecamp.org/hard-coding-concepts-explained-with-simple-real-life-analogies-280635e98e37 |
| CodeNewbie | https://www.codenewbie.org/learn |
| GNU Parallel tutorial | https://www.gnu.org/software/parallel/parallel_tutorial.html |
| Web designing tutorial list | https://github.com/djunicode/resources |
| Insights - Stack Overflow Blog | https://stackoverflow.blog/insights/ |
| RESOURCE NAME | URL |
|---|---|
| R Cheat Sheet and Guide for Graphical Parameters : FlowingData | https://flowingdata.com/2015/03/17/r-cheat-sheet-for-graphical-parameters/ |
| MiscCheatsheets | http://practicalcomputing.org/files/PCfB_Appendices.pdf |
| RESOURCE NAME | URL |
|---|---|
| Data Access - Australian Space Data Analysis Facility | https://asdaf.space/data/ |